PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00078g00024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 268aa    MW: 31677.4 Da    PI: 8.85
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00078g00024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-18449147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              rg W + Ed++l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  Peaxi162Scf00078g00024.1  4 RGHWRPHEDQKLRELVEKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                              899*****************************.***********996 PP

2Myb_DNA-binding59.67e-195699146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              r+++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Peaxi162Scf00078g00024.1 56 RNPFTEEEEERLLSAHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                              789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.828150IPR017930Myb domain
SMARTSM007178.6E-16352IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-30497IPR009057Homeodomain-like
PfamPF002491.3E-17449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-27557IPR009057Homeodomain-like
CDDcd001672.41E-13748No hitNo description
PROSITE profilePS5129426.84551105IPR017930Myb domain
SMARTSM007172.8E-1655103IPR001005SANT/Myb domain
PfamPF002495.7E-165698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2158104IPR009057Homeodomain-like
CDDcd001672.58E-115898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MCSRGHWRPH EDQKLRELVE KYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRNPFT  60
EEEEERLLSA HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARKCRERSK IYAKRATAAS  120
ATTIAHQKST SDEQELSSLM QQDKRQISNE HTTRSFNPFV DAHQQYFFSE RFAYPCNLTY  180
NYSLYPKLLH KDYLFHHAKV NQDEKQRTEF YDFLQVNTDS NKSEVIDHIN ASARIMRDDE  240
EVEQEAVDLH RSKSSRGFID FLSVGDSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3441057108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445809.11e-149PREDICTED: myb-related protein A-like
TrEMBLA0A0H4CRL41e-105A0A0H4CRL4_BETPL; MYB transcription factor 3
STRINGVIT_17s0000g01890.t017e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-86myb domain protein 52